varie

README.md

@@ -24,6 +24,14 @@ Mentre la scelta di mettere un comportamento in DEV rispetto a BEH e' chiara (ca
 Il **DEV** lavora durante Night a tempi lunghi rispetto a BEH e TUN. In pratica cambia la forma delle possibilita’ nell'ambito delle quali "agisce" BEH. Il DEV contiene quei behavior di modulazione che cambiano **fullness** di un Tub e **RF** di un context o episode. Ovvero c’e’ creazione di nuova “forma” di possibilita’ in BEH.
 C'e' una differenza se il cambio di fullness e' su un Tub di tipo floor (esempio Ca2+) o su un Tub di tipo concettuale (esempio BEH-PRE). Nel caso del Tub concettuale, il cambio di fullness determina un cambiamento di forma piu' "marcato" perche' l'enliver deve collegare o scollegare intricazioni fra concetti.
 
+### Context and Episode
+
+Il context e' a RF piu' alto, che attiva la possibilita' di un episode a RF piu' basso. L'episode "dura" in un intervallo di context. Il context puo' integrare le ipotesi fatte durante l'episode.
+
+### Condition, hypothesis
+
+...
+
 ### Tub / Blocchi
 
 Il concetto di tub / blocco e' una maniera di vedere in due modi diversi. Come contenitore di blocchi, e come blocco.

neuron/BEH-AXO.md

@@ -29,14 +29,16 @@ container: BEH-AXO
 
 ---
 
-**Fast — 1 ms**:
+**Fast — ms**:
 
 - AP fires → membrane jumps to peak, decays toward rest (Na/K-ATPase recharge). Here we do not comprehend the decay.
 - ATP cost charged per AP (Here we can comprehend it with an integrator)
 - Ca²⁺ enters via VGCCs, gated by CDI, eCB, and mGluR suppression
 - ATP cost charged per unit Ca²⁺ cleared. Here we charge per Ca2+ entered
-- CDI rises with Ca²⁺, recovers when Ca²⁺ is low
+- CDI (calcium-dependent inactivation of VGCCs)
-- Ca²⁺ trace integrates toward Tr_Ca
+-- CDI rises with Ca2+ each ms: accumulates across inter-spike intervals under pump failure
+-- CDI recovers when Ca2+ is low: rate -> 0 when Ca2+ is high — the self-locking feedback
+- Ca²⁺ trace integrates toward CaTraces
 - Vesicles release from RRP, based on CaMicro and RRP, suppressed by NT_cleft
 - NT added to cleft
 - NT_released_this_window accumulates (feeds Medium)
@@ -45,18 +47,18 @@ container: BEH-AXO
 
 ---
 
-**Medium — 1 s**:
+**Medium — seconds**:
 
 - Astrocyte EAATs clear 30% of remaining NT_cleft (Astrocyte behavior)
 - IP3 integrates NT_released_this_window (cumulative burst load)
 - If IP3 exceeds threshold → astrocyte Ca²⁺ wave triggered
 - mGluR autoreceptor activation updates from NT_released_this_window
 - eCB retrograde signal updates from V_post history (from postsynapse)
-- RP → RRP recruitment runs (rate gated by Tr_Ca, costs ATP)
+- RP → RRP recruitment runs (rate gated by CaTraces, costs ATP)
 
 ---
 
-**Slow — 1 min**: Metabolic
+**Slow — mins**: Metabolic
 
 - Glucose level sets metabolic health
 - ATP_demand (accumulated from Loop 1) reduces ATP_level
@@ -65,23 +67,14 @@ container: BEH-AXO
 
 ---
 
-**Actors**:
-
-- CDI (calcium-dependent inactivation of VGCCs)
--- CDI rises with Ca_micro each ms: accumulates across inter-spike intervals under pump failure
--- CDI recovers when Ca_micro is low: rate -> 0 when Ca_micro is high — the self-locking feedback
-
----
-
 **Tubs:**
 
-- **Ca2+**: Calcium Ion entering the Presynapse when VCGG open.
+- **Ca2+**: Calcium Ion entering the Presynapse when VCGG open that influence NT release. Normally returns to ~0 between spikes; stays elevated when pumps fail. They are key to check the concentration, release vescicles and modulation
-- **Ca2Micro**: free cytosolic Ca2+ in microdomain that influence NT release. Normally returns to ~0 between spikes; stays elevated when pumps fail. They are key to check the concentration, release vescicles and modulation
 - **Rrp**: Readily Releasable Pool: The Readily Releasable Pool consists of the vesicles that are "docked" and "primed" at the active zone of the synapse.  
 -- Location: Directly touching the presynaptic membrane.  
 -- Function: These are the first to be released when an action potential arrives.  
 -- Characteristics: This pool is very small (usually only about 0.5% to 5% of total vesicles) and can be exhausted quickly during high-frequency firing, leading to "short-term depression" of the signal.
-- **ReservePool**: The "Reserve Pool"
+- **Rp**: The "Reserve Pool"
 -- Location: The bulk of the vesicles held further back in the terminal, often tethered by a protein called synapsin.  
 -- Function: These are only mobilized during intense, prolonged stimulation once the RRP.  
 -- Characteristics: This makes up the vast majority of the vesicles (up to 80% or 90%).
@@ -98,8 +91,6 @@ container: BEH-PRE
     - Ca2+ ( fullness: 60x, active: 30x, emptiness: 0x )
        # developed_by: DEV-PRE-CA2+FULL from DEV.N
 
-    - CaMicro ( fullness: 60x, active: 30x, emptiness: 0x )
-
     - Rrp ( fullness: 30x, active: 15x, emptiness: 0x )
        # developed_by: DEV-PRE-RRP-FULL from DEV.N
 
@@ -224,13 +215,13 @@ episode: NTreleaseLow
 
 ...
 
-#### mGlur
+#### mGlur concentration
 
-#### eCB
+#### eCB concentration
 
-#### CDI
+#### CDI concentration
 
-#### RP->RRP
+#### RP->RRP shuttling
 
 ### min: behavior
 
@@ -251,56 +242,6 @@ container: BEH-PRE-VGCC
     - AP ( contained_by: BEH-SOMA )
 ```
 
-### VGCC-Breaking: Contexts
-
-#### CDIConcentration: Context
-
-```Gen
-context: CDIConcentration
-  contained_by: BEH-PRE-VGCC
-
-  in_context: AP
-  rf: ( active: 60x )
-
-  condition: NOT (Ca2Micro empty) AND NOT (Ca2Micro full) 
-    out_context: Ca2MicroMedium
-
-  condition: (Ca2Micro full) 
-    out_context: Ca2MicroFull
-```
-
-#### eCBConcentration: Context
-
-```Gen
-context: eCBConcentration
-  contained_by: BEH-PRE-VGCC
-
-  in_context: AP
-  rf: ( active: 60x )
-
-  condition: NOT (Ca2Micro empty) AND NOT (Ca2Micro full) 
-    out_context: Ca2MicroMedium
-
-  condition: (Ca2Micro full) 
-    out_context: Ca2MicroFull
-```
-
-#### mGluRConcentration: Context
-
-```Gen
-context: mGluRConcentration
-  contained_by: BEH-PRE-VGCC
-
-  in_context: AP
-  rf: ( active: 60x )
-
-  condition: NOT (Ca2Micro empty) AND NOT (Ca2Micro full) 
-    out_context: Ca2MicroMedium
-
-  condition: (Ca2Micro full) 
-    out_context: Ca2MicroFull
-```
-
 ### Ca2+enter: Episodes
 
 Here we comprehend the breaking activity on VGCC by: CDI,eCB and mGluR: