Merge branch 'master' of https://repo.splindex.net/ocrampal/organism
This commit is contained in:
@@ -14,44 +14,51 @@ Expansions and modulations:
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```Gen
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include:
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post_ampa.md
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POSTSYNAPSE
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type: comprehension
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expansion:
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_@PostAmpaAll: TUB [ comprehension: POST-AMPA, full: 10x, active: 5x, empty: 2x ]
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intrication:
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# Scope
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!DAY: INTRICATION [ ref: &ORGANISM.!DAY ]
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!NIGHT: INTRICATION [ ref: &ORGANISM.!NIGHT ]
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# Context
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*bAP: INTRICATION [ ref: &SOMA.*bAP ]
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*TunPossible: INTRICATION [ ref: &NEURON.*TunPossible ]
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type: comprehension
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# Tub
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_NT: INTRICATION [ ref: &ASTROSYNAPSE._NT ]
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_Vpost: INTRICATION [ ref: ??._VPost ]
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include: post_ampa.md
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// ########################## Intrication ##########################
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// Scope
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!DAY: INTRICATE [ scope: &ORGANISM.!DAY ]
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!NIGHT: INTRICATE [ scope: &ORGANISM.!NIGHT ]
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// Context
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*bAP: INTRICATE [ context: &SOMA.*bAP ]
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*TunPossible: INTRICATE [ context: &NEURON.*TunPossible ]
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// Tub
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_NT: INTRICATE [ tub: &ASTROSYNAPSE._NT ]
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_Vpost: INTRICATE [ tub: ??._VPost ]
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instantiation:
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# Context
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// ########################## Instantiation ##########################
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// Context
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# Tub
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_Ca2: TUB [ full: 60x, active: 30x, empty: 0x ]
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_Na: TUB [ full: 60x, active: 30x, empty: 0x ]
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_Nox: TUB [ full: 100x, active: 20x, empty: 0x ] # Nitric Oxide (NO): A gas that diffuses freely.
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_eCB: TUB [ full: 100x, active: 20x, empty: 0x ] # Endocannabinoids (e.g., 2-AG)
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// Tub
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_Ca2: INSTANTIATE [ tub: local, full: 60x, act: 30x, empty: 0x ]
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_Na: INSTANTIATE [ tub: local, full: 60x, act: 30x, empty: 0x ]
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_Nox: INSTANTIATE [ tub: local, full: 100x, act: 20x, empty: 0x ] # Nitric Oxide (NO): A gas that diffuses freely.
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_eCB: INSTANTIATE [ tub: local, full: 100x, act: 20x, empty: 0x ] # Endocannabinoids (e.g., 2-AG)
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_posMod: TUB [ full: None, active: ??, empty: 0x) # riferimento a possible di BEH-PRE
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_actMod: TUB [ full: None, active: ??, empty: ??) # riferimento a active di BEH-PRE
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_posMod: INSTANTIATE [ tub: local, full: None, act: ??, empty: 0x) # riferimento a possible di BEH-PRE
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_actMod: INSTANTIATE [ tub: local, full: None, act: ??, empty: ??) # riferimento a active di BEH-PRE
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# Behaviour
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$: BEHAVIOUR [ behaviour: MAIN_POST ]
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$: BEHAVIOUR [ behaviour: TUN-POST-AMPA ]
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// Container
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void: INSTANTIATE [ scope: !DAY, container: ACTION, context: *bAP ]
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void: INSTANTIATE [ scope: !DAY, container: RECOVERY, context: NOT *bAP, *Spike_train ]
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void: INSTANTIATE [ scope: !DAY, container: PREPARE, context: * NOT Spike_train ]
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void: INSTANTIATE [ scope: !NIGHT, container: ACTION, context: *Not_rem_1 ]
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void: INSTANTIATE [ scope: !NIGHT, container: RECOVERY, context: *Not_rem_2 ]
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void: INSTANTIATE [ scope: !NIGHT, container: PREPARE, context: *Rem ]
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// ########################## Expansion ##########################
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_@PostAmpaAll: INSTANTIATE [ tub: EXPAND [ comprehension: POST-AMPA ], full: 10x, active: 5x, empty: 2x ]
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```
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@@ -64,7 +71,9 @@ POSTSYNAPSE
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- **_eCB**:
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- **_Nox**:?
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### MAIN_POST: !DAY
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## !DAY | ACTION | *bAP
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//### MAIN_POST: !DAY
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```
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MAIN_POST
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type: behaviour
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@@ -89,12 +98,12 @@ MAIN_POST
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```
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#### *bAP
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//#### *bAP
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##### CaNDMAEnterMax
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//##### CaNDMAEnterMax
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```Gen
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CaNDMAEnterMax
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@@ -108,7 +117,7 @@ CaNDMAEnterMax
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trace:
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```
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##### CaNDMAEnterMed
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//##### CaNDMAEnterMed
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```Gen
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CaNDMAEnterMed
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@@ -121,9 +130,10 @@ CaNDMAEnterMed
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trace:
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```
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#### NOT *bAP
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## !DAY | RECOVERY | NOT *bAP, *Spike_train
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//#### NOT *bAP
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##### CaNDMAEnterLow
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//##### CaNDMAEnterLow
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```Gen
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CaNDMAEnterLow
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@@ -136,7 +146,7 @@ CaNDMAEnterLow
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trace:
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```
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##### CaNDMAEnterMedNotBap
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//##### CaNDMAEnterMedNotBap
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```Gen
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CaNDMAEnterMedNotBap
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@@ -149,7 +159,7 @@ CaNDMAEnterMedNotBap
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trace:
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```
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##### CaClearance
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//##### CaClearance
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```Gen
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CaClearance # Low
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@@ -162,7 +172,7 @@ CaClearance # Low
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trace: None
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```
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##### VPostMax
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//##### VPostMax
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```Gen
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VPostMa
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type: accumulator
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@@ -174,7 +184,7 @@ VPostMa
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trace: None
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```
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##### VPostMed
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//##### VPostMed
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```Gen
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VPostMed
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type: accumulator
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@@ -186,7 +196,7 @@ VPostMed
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trace: None
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```
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##### VPostMin
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//##### VPostMin
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```Gen
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VPostMin
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type: accumulator
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@@ -199,7 +209,7 @@ VPostMin
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```
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Il VPost clearance lo facciamo qui nel container dove creaiamo anche i VPost, perche' altrimenti, se lo facessimo in DB, perderemmo l'aspetto temporale della contribuzione dei singoli POST.
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##### VPostClearance
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//##### VPostClearance
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```Gen
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VPostClearance
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type: accumulator
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@@ -213,7 +223,7 @@ VPostClearance
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Il NA clearance lo mettiamo qui come sniplet, perche' gli AMPA creano, e questi pompano fuori. Qui non e' un problema di perdere l'integrazione temporale, perche' gli AMPA sono tutti uguali nel loro behavior. Abbiamo messo gli AMPA come container perche' cosi' possiamo modularne la numerosita'.
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##### NaClearanceHigh
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//##### NaClearanceHigh
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```Gen
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NaClearanceHigh
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type: accumulator
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@@ -225,7 +235,7 @@ NaClearanceHigh
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trace: None
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```
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##### NaClearanceLow
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//##### NaClearanceLow
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```Gen
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NaClearanceLow
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type: accumulator
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@@ -237,7 +247,7 @@ NaClearanceLow
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trace: None
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```
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### TUN-POST-AMPA: !DAY
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//### TUN-POST-AMPA: !DAY
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```Gen
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TUN-POST-AMPA
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type: behaviour
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@@ -256,9 +266,9 @@ TUN-POST-AMPA
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```
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#### *TunPossible
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//#### *TunPossible
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##### CheckTunPostAmpa
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//##### CheckTunPostAmpa
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```Gen
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CheckTunPostAmpa
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type: contextor
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@@ -271,7 +281,7 @@ CheckTunPostAmpa
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out_context: *TryTunDownPostAmpa
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```
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##### PossibleUpPostAmpaTun
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//##### PossibleUpPostAmpaTun
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```Gen
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PossibleUpPostAmpaTun: ( active: 10x )
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type: accumulator
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@@ -282,7 +292,7 @@ PossibleUpPostAmpaTun: ( active: 10x )
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trace:
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```
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##### PossibleDownPostAmpaTun
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//##### PossibleDownPostAmpaTun
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```Gen
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PossibleDownPostAmpaTun
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type: accumulator
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@@ -292,3 +302,12 @@ PossibleDownPostAmpaTun
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action:
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trace:
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```
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## !DAY | PREPARE | NOT *Spike_train
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## !NIGHT | ACTION | *Not_rem_1
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## !NIGHT | RECOVERY | *Not_rem_2
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## !NIGHT | PREPARE | *Rem
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