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neuron/soma.md
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@@ -101,45 +101,39 @@ container: SOMA
### ms: SOMA ### ms: SOMA
#### VDB-Concentration: check_tpc #### SOMA-Status: check_tpc
As dendrites deliver current (VDB​), the soma acts like a capacitor. It "stores" this charge in the form of membrane potential. This contextualizes VGSC-SOMA to open ion channels that let Na+ ions in. As dendrites deliver current (VDB​), the soma acts like a capacitor. It "stores" this charge in the form of membrane potential. This contextualizes VGSC-SOMA to open ion channels that let Na+ ions in.
This only applies if not ApCtx, or in other words, SOMA is not in refractory period. This only applies if not ApCtx, or in other words, SOMA is not in refractory period.
```Gen ```Gen
check_tpc: VDB-Concentration check_tpc: SOMA-Status
contained_by: SOMA contained_by: SOMA
tpc: any in_context: any
rf: ( active: 60x ) rf: ( active: 60x )
condition: ( VDB fullness ) AND NOT ApCtx condition: ( VDB fullness ) AND NOT ApCtx
out_tpc: VDBMaxCtx out_context: VDBMaxCtx
condition: ( VDB mediumness ) AND NOT ApCtx condition: ( VDB mediumness ) AND NOT ApCtx
out_tpc: VDBMediumCtx out_context: VDBMediumCtx
condition: ( VDB emptiness ) AND NOT ApCtx condition: ( VDB emptiness ) AND NOT ApCtx
out_tpc: VDBLowCtx out_context: VDBLowCtx
```
#### SomaSpill: interacting condition: NOT ( Na empty )
out_context: NaSpill_ctx
```Gen condition: NOT ( RefractorySoma empty )
interacting: SomaSpill out_context: RefractorySoma_ctx
contained_by: SOMA
context: any
rf: ( active: 8x )
hypothesis: NOT NA emptiness
action: [ decrease NA ]
trace:
``` ```
#### SomaSpike: check_tpc #### SomaSpike: check_tpc
Il fatto che mettiamo il check di AP separato dal check del Soma-Status, e' perche' vogliamo poter avere un RF specifico per AP, eventualmente tunabile.
Qui siamo nella fase effettiva di spike, non refractory che viene dopo. Fa da contesto di durata fra un RF ed un altro. Qui siamo nella fase effettiva di spike, non refractory che viene dopo. Fa da contesto di durata fra un RF ed un altro.
La fullness di Na rappresenta il threshold e puo' essere modificato. La fullness di RefractorySoma rappresenta la lunghezza del refractory. La fullness di Na rappresenta il threshold e puo' essere modificato. La fullness di RefractorySoma rappresenta la lunghezza del refractory.
@@ -148,23 +142,23 @@ La fullness di Na rappresenta il threshold e puo' essere modificato. La fullness
check_tpc: SomaSpike check_tpc: SomaSpike
contained_by: SOMA contained_by: SOMA
context: fixed in_context: any
rf: ( active: 60x ) rf: ( active: 30x )
condition: ( Na fullness ) AND ( RefractorySoma emptiness ) condition: ( Na fullness ) AND ( RefractorySoma emptiness )
out_context: ApCtx out_context: ApCtx
out_context: bApCtx out_context: bApCtx
``` ```
#### ApBeh: interacting #### ActiveAP: interacting
Durante la fase effettiva di spike, eliminiamo Na accumulati, riempiamo RefractorySoma per fase di refractory e riempiamo Ca2+ per le tracce medio termine di potenziamento/depotenziamento. Durante la fase effettiva di spike, eliminiamo Na accumulati, riempiamo RefractorySoma per fase di refractory e riempiamo Ca2+ per le tracce medio termine di potenziamento/depotenziamento.
```Gen ```Gen
interacting: ApBeh interacting: ActiveAP
contained_by: SOMA contained_by: SOMA
context: ApCtx in_context: ApCtx
rf: ( active: 8x ) rf: ( active: 8x )
hypothesis: NOT Na empty hypothesis: NOT Na empty
@@ -180,18 +174,32 @@ interacting: ApBeh
trace: trace:
``` ```
#### RefractorySpill: interacting #### NaSpill: interacting
```Gen
interacting: NaSpill
contained_by: SOMA
in_context: NaSpill_ctx
rf: ( active: 8x )
hypothesis: NOT ( Na emptiness )
action: [ decrease Na ]
trace:
```
#### RefractorySomaSpill: interacting
Lo spill deve essere piu' lento dell'increase che avviene in APBeh Lo spill deve essere piu' lento dell'increase che avviene in APBeh
```Gen ```Gen
interacting: RefractorySpill interacting: RefractorySomaSpill
contained_by: SOMA contained_by: SOMA
context: any in_context: RefractorySoma_ctx
rf: ( active: 16x ) rf: ( active: 16x )
hypothesis: NOT RefractorySoma empty hypothesis: NOT ( RefractorySoma empty )
action: [ decrease RefractorySoma ] action: [ decrease RefractorySoma ]
trace: trace:
``` ```