From 9c7ce96ff8acd7a422bc43240c5a94e8a692d8f8 Mon Sep 17 00:00:00 2001
From: ocrampal <ocrampal@ocrampal.com>
Date: Mon, 20 Apr 2026 12:10:31 +0200
Subject: [PATCH] unito vari context

---
 neuron/soma.md | 64 ++++++++++++++++++++++++++++----------------------
 1 file changed, 36 insertions(+), 28 deletions(-)

diff --git a/neuron/soma.md b/neuron/soma.md
index 8472af2..f7c6cf1 100644
--- a/neuron/soma.md
+++ b/neuron/soma.md
@@ -101,45 +101,39 @@ container: SOMA
 
 ### ms: SOMA
 
-#### VDB-Concentration: check_tpc
+#### SOMA-Status: check_tpc
 
 As dendrites deliver current (VDB​), the soma acts like a capacitor. It "stores" this charge in the form of membrane potential. This contextualizes VGSC-SOMA to open ion channels that let Na+ ions in.
 
 This only applies if not ApCtx, or in other words, SOMA is not in refractory period.
 
 ```Gen
-check_tpc: VDB-Concentration
+check_tpc: SOMA-Status
   contained_by: SOMA
 
-  tpc: any
+  in_context: any
   rf: ( active: 60x )
 
-  condition: (VDB fullness ) AND NOT ApCtx
-    out_tpc: VDBMaxCtx
+  condition: ( VDB fullness ) AND NOT ApCtx
+    out_context: VDBMaxCtx
 
   condition: ( VDB mediumness ) AND NOT ApCtx
-    out_tpc: VDBMediumCtx 
+    out_context: VDBMediumCtx 
 
   condition: ( VDB emptiness ) AND NOT ApCtx
-    out_tpc: VDBLowCtx
-```
+    out_context: VDBLowCtx
 
-#### SomaSpill: interacting
+  condition: NOT ( Na empty )
+    out_context: NaSpill_ctx
 
-```Gen
-interacting: SomaSpill
-  contained_by: SOMA
-
-  context: any
-  rf: ( active: 8x )
-
-  hypothesis: NOT NA emptiness
-    action: [ decrease NA ]
-    trace:
+  condition: NOT ( RefractorySoma empty )
+    out_context: RefractorySoma_ctx
 ```
 
 #### SomaSpike: check_tpc
 
+Il fatto che mettiamo il check di AP separato dal check del Soma-Status, e' perche' vogliamo poter avere un RF specifico per AP, eventualmente tunabile.
+
 Qui siamo nella fase effettiva di spike, non refractory che viene dopo. Fa da contesto di durata fra un RF ed un altro.
 
 La fullness di Na rappresenta il threshold e puo' essere modificato. La fullness di RefractorySoma rappresenta la lunghezza del refractory.
@@ -148,23 +142,23 @@ La fullness di Na rappresenta il threshold e puo' essere modificato. La fullness
 check_tpc: SomaSpike
   contained_by: SOMA
 
-  context: fixed
-  rf: ( active: 60x )
+  in_context: any
+  rf: ( active: 30x )
 
   condition: ( Na fullness ) AND ( RefractorySoma emptiness )
     out_context: ApCtx
     out_context: bApCtx
 ```
 
-#### ApBeh: interacting
+#### ActiveAP: interacting
 
 Durante la fase effettiva di spike, eliminiamo Na accumulati, riempiamo RefractorySoma per fase di refractory e riempiamo Ca2+ per le tracce medio termine di potenziamento/depotenziamento.
 
 ```Gen
-interacting: ApBeh
+interacting: ActiveAP
   contained_by: SOMA
 
-  context: ApCtx
+  in_context: ApCtx
   rf: ( active: 8x )
 
   hypothesis: NOT Na empty
@@ -180,18 +174,32 @@ interacting: ApBeh
     trace: 
 ```
 
-#### RefractorySpill: interacting
+#### NaSpill: interacting
+
+```Gen
+interacting: NaSpill
+  contained_by: SOMA
+
+  in_context: NaSpill_ctx
+  rf: ( active: 8x )
+
+  hypothesis: NOT ( Na emptiness )
+    action: [ decrease Na ]
+    trace:
+```
+
+#### RefractorySomaSpill: interacting
 
 Lo spill deve essere piu' lento dell'increase che avviene in APBeh
 
 ```Gen
-interacting: RefractorySpill
+interacting: RefractorySomaSpill
   contained_by: SOMA
 
-  context: any
+  in_context: RefractorySoma_ctx
   rf: ( active: 16x )
 
-  hypothesis: NOT RefractorySoma empty
+  hypothesis: NOT ( RefractorySoma empty )
     action: [ decrease RefractorySoma ]
     trace: 
 ```