tpc: Temporal Possibility Context

neuron/soma.md

@@ -7,7 +7,7 @@ Qui comprendiamo:
 - VGSC-SOMA-M: Na ion channels. Open only when VDB medium
 - VGSC-SOMA-L: Na ion channels. Open only when VDB low
 
-## SOMA: Container
+## SOMA: container
 
 ---
 
@@ -105,35 +105,35 @@ container: SOMA
 
 ### ms: SOMA
 
-#### CheckVDB: Episode
+#### VDB-Concentration: check_tpc
 
 As dendrites deliver current (VDB​), the soma acts like a capacitor. It "stores" this charge in the form of membrane potential. This contextualizes VGSC-SOMA to open ion channels that let Na+ ions in.
 
 This only applies if not ApCtx, or in other words, SOMA is not in refractory period.
 
 ```Gen
-episode: CheckVDB
+check_tpc: VDB-Concentration
   contained_by: SOMA
 
-  context: Fixed
+  tpc: any
   rf: ( active: 60x )
 
   condition: (VDB fullness ) AND NOT ApCtx
-    out_context: VDBMaxCtx
+    out_tpc: VDBMaxCtx
 
   condition: ( VDB mediumness ) AND NOT ApCtx
-    out_context: VDBMediumCtx 
+    out_tpc: VDBMediumCtx 
 
   condition: ( VDB emptiness ) AND NOT ApCtx
-    out_context: VDBLowCtx
+    out_tpc: VDBLowCtx
 ```
 
-#### SomaSpike: Episode
+#### SomaSpike: check_tpc
 
 Qui siamo nella fase effettiva di spike, non refractory che viene dopo. Fa da contesto di durata fra un RF ed un altro.
 
 ```Gen
-episode: SomaSpike
+check_tpc: SomaSpike
   contained_by: SOMA
 
   context: fixed
@@ -144,7 +144,7 @@ episode: SomaSpike
     out_context: bApCtx
 ```
 
-#### ApBeh: Interacting
+#### ApBeh: interacting
 
 Durante la fase effettiva di spike, eliminiamo Na accumulati, riempiamo RefractorySoma per fase di refractory e riempiamo Ca2+ per le tracce medio termine di potenziamento/depotenziamento.
 
@@ -168,7 +168,7 @@ interacting: ApBeh
     trace: 
 ```
 
-#### RefractoryBeh: Interacting
+#### RefractoryBeh: interacting
 
 ```Gen
 interacting: RefractoryBeh
@@ -203,10 +203,10 @@ tuner: VGSC-SOMA-TUN
  tub_intricated:
 ```
 
-##### Check: Episode
+##### Check: check_tpc
 
 ```Gen
-context: episode
+context: check_tpc
   contained_by: VGSC-SOMA-TUN
 
   context: TunPossible
@@ -216,7 +216,7 @@ context: episode
   out_context: TunSomaVcgg
 ```
 
-##### ?: Interacting
+##### ?: interacting
 
 ```Gen
 interacting: ?
@@ -230,7 +230,7 @@ interacting: ?
   trace: 
 ```
 
-## VGSC-SOMA-H: Container
+## VGSC-SOMA-H: container
 
 Voltage Gated Sodium Channel: difficult to open (High)
 
@@ -246,7 +246,7 @@ container: VGSC-SOMA-H
 
 ### sec: VGSC-SOMA-H
 
-#### NaEnterH: Interacting
+#### NaEnterH: interacting
 
 Se metto il controllo sulla (NOT Ready fullness) il VGSC puo' far entrare un numero di Na non superiore ad un massimo.
 
@@ -262,12 +262,12 @@ interacting: NaEnterH
     trace: None
 ```
 
-##### CheckRefractoryH: Episode
+##### CheckRefractoryH: check_tpc
 
 Il check su refractory deve essere fatto ad un RF maggiore della eliminazione di Refractory. Questo perche' e' un era nella qualle avviene l'episodio.
 
 ```Gen
-episode: CheckRefractoryH
+check_tpc: CheckRefractoryH
   contained_by: VGSC-H-SOMA
 
   context: NOT RefractoryH
@@ -277,7 +277,7 @@ episode: CheckRefractoryH
     out_context: RefractoryH
 ```
 
-##### RefractoryH: Interacting
+##### RefractoryH: interacting
 
 Questo episodio deve girare varie volte nell'ambito del contesto di refractory che viene controllato ad un RF maggiore.
 
@@ -288,12 +288,12 @@ interacting: RefractoryH
   context: RefractoryH
   rf: ( active: 1x )
 
-  hypothesis: NOT ( Ready emptyness )  
-    action: [ Ready decrease ]
+  hypothesis: NOT ( ReadyH emptyness )  
+    action: [ ReadyH decrease ]
     trace: None
 ```
 
-## VGSC-SOMA-M: Container
+## VGSC-SOMA-M: container
 
 Voltage Gated Sodium Channel
 
@@ -304,7 +304,7 @@ container: VGSC-SOMA-M
 
 ### sec: VGSC-SOMA-M
 
-#### Interacting2
+#### interacting2
 
 ```Gen
 interacting: ??
@@ -318,7 +318,7 @@ interacting: ??
     trace: None
 ```
 
-## VGSC-SOMA-L: Container
+## VGSC-SOMA-L: container
 
 Voltage Gated Sodium Channel
 
@@ -329,7 +329,7 @@ container: VGSC-SOMA-M
 
 ### sec: VGSC-SOMA-L
 
-#### Interacting3
+#### interacting3
 
 ```Gen
 interacting: ??