diff --git a/neuron/soma.md b/neuron/soma.md index 952057b..0ee3278 100644 --- a/neuron/soma.md +++ b/neuron/soma.md @@ -7,7 +7,7 @@ Qui comprendiamo: - VGSC-SOMA-M: Na ion channels. Open only when VDB medium - VGSC-SOMA-L: Na ion channels. Open only when VDB low -## SOMA: Container +## SOMA: container --- @@ -105,35 +105,35 @@ container: SOMA ### ms: SOMA -#### CheckVDB: Episode +#### VDB-Concentration: check_tpc As dendrites deliver current (VDB​), the soma acts like a capacitor. It "stores" this charge in the form of membrane potential. This contextualizes VGSC-SOMA to open ion channels that let Na+ ions in. This only applies if not ApCtx, or in other words, SOMA is not in refractory period. ```Gen -episode: CheckVDB +check_tpc: VDB-Concentration contained_by: SOMA - context: Fixed + tpc: any rf: ( active: 60x ) condition: (VDB fullness ) AND NOT ApCtx - out_context: VDBMaxCtx + out_tpc: VDBMaxCtx condition: ( VDB mediumness ) AND NOT ApCtx - out_context: VDBMediumCtx + out_tpc: VDBMediumCtx condition: ( VDB emptiness ) AND NOT ApCtx - out_context: VDBLowCtx + out_tpc: VDBLowCtx ``` -#### SomaSpike: Episode +#### SomaSpike: check_tpc Qui siamo nella fase effettiva di spike, non refractory che viene dopo. Fa da contesto di durata fra un RF ed un altro. ```Gen -episode: SomaSpike +check_tpc: SomaSpike contained_by: SOMA context: fixed @@ -144,7 +144,7 @@ episode: SomaSpike out_context: bApCtx ``` -#### ApBeh: Interacting +#### ApBeh: interacting Durante la fase effettiva di spike, eliminiamo Na accumulati, riempiamo RefractorySoma per fase di refractory e riempiamo Ca2+ per le tracce medio termine di potenziamento/depotenziamento. @@ -168,7 +168,7 @@ interacting: ApBeh trace: ``` -#### RefractoryBeh: Interacting +#### RefractoryBeh: interacting ```Gen interacting: RefractoryBeh @@ -203,10 +203,10 @@ tuner: VGSC-SOMA-TUN tub_intricated: ``` -##### Check: Episode +##### Check: check_tpc ```Gen -context: episode +context: check_tpc contained_by: VGSC-SOMA-TUN context: TunPossible @@ -216,7 +216,7 @@ context: episode out_context: TunSomaVcgg ``` -##### ?: Interacting +##### ?: interacting ```Gen interacting: ? @@ -230,7 +230,7 @@ interacting: ? trace: ``` -## VGSC-SOMA-H: Container +## VGSC-SOMA-H: container Voltage Gated Sodium Channel: difficult to open (High) @@ -246,7 +246,7 @@ container: VGSC-SOMA-H ### sec: VGSC-SOMA-H -#### NaEnterH: Interacting +#### NaEnterH: interacting Se metto il controllo sulla (NOT Ready fullness) il VGSC puo' far entrare un numero di Na non superiore ad un massimo. @@ -262,12 +262,12 @@ interacting: NaEnterH trace: None ``` -##### CheckRefractoryH: Episode +##### CheckRefractoryH: check_tpc Il check su refractory deve essere fatto ad un RF maggiore della eliminazione di Refractory. Questo perche' e' un era nella qualle avviene l'episodio. ```Gen -episode: CheckRefractoryH +check_tpc: CheckRefractoryH contained_by: VGSC-H-SOMA context: NOT RefractoryH @@ -277,7 +277,7 @@ episode: CheckRefractoryH out_context: RefractoryH ``` -##### RefractoryH: Interacting +##### RefractoryH: interacting Questo episodio deve girare varie volte nell'ambito del contesto di refractory che viene controllato ad un RF maggiore. @@ -288,12 +288,12 @@ interacting: RefractoryH context: RefractoryH rf: ( active: 1x ) - hypothesis: NOT ( Ready emptyness ) - action: [ Ready decrease ] + hypothesis: NOT ( ReadyH emptyness ) + action: [ ReadyH decrease ] trace: None ``` -## VGSC-SOMA-M: Container +## VGSC-SOMA-M: container Voltage Gated Sodium Channel @@ -304,7 +304,7 @@ container: VGSC-SOMA-M ### sec: VGSC-SOMA-M -#### Interacting2 +#### interacting2 ```Gen interacting: ?? @@ -318,7 +318,7 @@ interacting: ?? trace: None ``` -## VGSC-SOMA-L: Container +## VGSC-SOMA-L: container Voltage Gated Sodium Channel @@ -329,7 +329,7 @@ container: VGSC-SOMA-M ### sec: VGSC-SOMA-L -#### Interacting3 +#### interacting3 ```Gen interacting: ??