Update presynapse.md

elements/neuron/presynapse.md

@@ -47,7 +47,7 @@ PRESYNAPSE
 
     // Context  
   *AP: INTRICATE [ context: &SOMA.*AP ]
-  *TunPossible: INTRICATE [ context: &NEURON.*TunPossible ] 
+  *Spike_train: INTRICATE [ context: &NEURON.*Spike_train ] 
 
     // Tub
   _NT: INTRICATE [ tub: &ASTROSYNAPSE._NT ] 
@@ -83,7 +83,7 @@ PRESYNAPSE
     
 ```
   
-## ACTION
+## ACTION | !DAY | *AP 
 
 ```Gen
 
@@ -91,8 +91,6 @@ ACTION
 
   type: container
 
-  // !DAY | *AP 
-  
   // ########################## NTRelease | Fast (ms–s) ##########################
 
   // Devo aggiungere la limitazione dovuta al Glutamate Spillover GluR e retro_eCB !!!!
@@ -131,17 +129,15 @@ ACTION
 
 ```
   
-## TRACE
+## RECOVER | !DAY | ( NOT *AP ) AND ( NOT *Spike_train )
 
 ```Gen
 
-TRACE
+RECOVER
 
   type: container
 
-  // !DAY | NOT *AP
+  // ########################## _Ca2 level | Fast (ms–s) ##########################
-
-  // ########################## _Ca2 level | Short (ms–s) ##########################
 
   TracesAccLow: INSTANTIATE [ snippet: accumulator, event: 3x ] {
     hypothesis: _Ca2 emptiness
@@ -164,22 +160,7 @@ TRACE
     else: None
   }
 
-  // ########################## Long (hr) ##########################
+  // ########################## TracesClearance | Fast (ms–s) ##########################
-
-
-```
-
-## DECAY
-
-```Gen
-
-DECAY
-
-  type: container
-
-  // !DAY | NOT *AP
-  
-  // ########################## TracesClearance | Short (ms–s) ##########################
 
     TracesClearance: INSTANTIATE [ snippet: accumulator, event: 30x] {
     
@@ -200,38 +181,7 @@ DECAY
 
     }
 
-  // ########################## eCBClearance | Medium (s–min) ##########################
+  // ##########################  Rp Shuttle | Fast (ms–s) ##########################
-  
-    eCBClearenceMedium: INSTANTIATE [ snippet: accumulator, event: 24x ] {
-      hypothesis: NOT _eCB empty
-        action: [ _eCB decrease ]
-        cost: 
-      else: None
-    }
-
-    eCBClearenceLow: INSTANTIATE [ snippet: accumulator, event: 48x] {
-      hypothesis: NOT _eCB empty
-        action: [ _eCB decrease ]
-        cost: 
-      else: None
-    }
-
-  // ########################## ??? | Long (hr) ##########################
-
-
-```
-
-## RECOVER
-
-```Gen
-
-RECOVER
-
-  type: container
-
-  // !DAY | NOT *AP
-  
-  // ##########################  Rp Shuttle | Short (ms–s) ##########################
 
     // The "Hard Bottleneck" State. Recruitment is throttled by a lack of signal, a lack of supply, or a lack of space. 
     // If even one of these "Near-Stop" conditions is met, the rate cannot exceed "Slow," regardless of the other two conditions. 
@@ -258,24 +208,9 @@ RECOVER
     else: None
   }
 
-  // ########################## RefillGlutamine | Medium (s–min) ##########################
-
-    // The "High Performance" State. Multiple systems are optimized, but one is still at a "mediumness" level. 
-    // This represents an active synapse that hasn't reached its absolute peak because either the supply is only 50% 
-    // or the \_Rrp isn't empty enough to create that "maximal vacuum" pull. Rate: 1.25 – 1.94
-
-  RefillGlutamine: INSTANTIATE [ snippet: accumulator, event: 24x ] {
-    hypothesis: ( _CaTraceHigh fullness AND _RP fullness AND _Rrp mediumness ) OR   # signal + supply
-                ( _CaTraceHigh fullness AND _RP mediumness AND _Rrp emptiness ) OR  # signal + vacancy
-                ( _CaTraceMedium fullness AND _RP fullness AND _Rrp emptiness )     # supply + vacancy
-      action: [ _RP decrease, _Rrp increase ]
-      cost: 
-    else: None
-  }
-
 ```
   
-## ADJUST
+## ADJUST | !DAY | NOT *Spike_train 
 
 ```Gen
 
@@ -283,8 +218,6 @@ ADJUST
 
   type: container
 
-  // !DAY | *TunPossible
-
   // ########################## PRE_VGCC Tun | Medium (s–min) ##########################
 
     // qui stiamo attivando e disattivando PRE_VGCC. Fra un massimo full e minimo empty (empty puo' non essere 0)
@@ -304,6 +237,37 @@ ADJUST
       else: 
   }
 
+  // ########################## RefillGlutamine | Medium (s–min) ##########################
+
+    // The "High Performance" State. Multiple systems are optimized, but one is still at a "mediumness" level. 
+    // This represents an active synapse that hasn't reached its absolute peak because either the supply is only 50% 
+    // or the \_Rrp isn't empty enough to create that "maximal vacuum" pull. Rate: 1.25 – 1.94
+
+  RefillGlutamine: INSTANTIATE [ snippet: accumulator, event: 24x ] {
+    hypothesis: ( _CaTraceHigh fullness AND _RP fullness AND _Rrp mediumness ) OR   # signal + supply
+                ( _CaTraceHigh fullness AND _RP mediumness AND _Rrp emptiness ) OR  # signal + vacancy
+                ( _CaTraceMedium fullness AND _RP fullness AND _Rrp emptiness )     # supply + vacancy
+      action: [ _RP decrease, _Rrp increase ]
+      cost: 
+    else: None
+  }
+
+  // ########################## eCBClearance | Medium (s–min) ##########################
+  
+    eCBClearenceMedium: INSTANTIATE [ snippet: accumulator, event: 24x ] {
+      hypothesis: NOT _eCB empty
+        action: [ _eCB decrease ]
+        cost: 
+      else: None
+    }
+
+    eCBClearenceLow: INSTANTIATE [ snippet: accumulator, event: 48x] {
+      hypothesis: NOT _eCB empty
+        action: [ _eCB decrease ]
+        cost: 
+      else: None
+    }
+    
 ```
 
 ## DEVELOP