ocrampal/organism
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Update elements/neuron/soma.md

Browse Source
This commit is contained in:
Sergio Marchetti
2026-06-03 18:55:02 +02:00
parent 059ff8b39f
commit 1f120c3b9c
1 changed files with 31 additions and 18 deletions
Download Patch File Download Diff File Expand all files Collapse all files
elements/neuron/soma.md
+30 -17
View File
@@ -19,8 +19,27 @@ SOMA
_@SOMA_VGSC-M: TUB [ comprehension: SOMA_VGSC, full: 50x, active: 20x, empty: 10x ]
_@SOMA_VGSC-L: TUB [ comprehension: SOMA_VGSC, full: 50x, active: 20x, empty: 10x ]
intrication:
# Scope
!DAY: INTRICATION [ ref: &ORGANISM.!DAY ]
!NIGHT: INTRICATION [ ref: &ORGANISM.!NIGHT ]
# Context
*AP: INTRICATION [ ref: &SOMA.*AP ]
*TunePossible: INTRICATION [ ref: &... ] # To be defined...
# Tub
_SpikeTrainTraces: INTRICATION [ ref: &NEURON._SpikeTrainTraces ]
instantiation:
# Tub
_VDB: TUB [ full: 60x, active: 30x, empty: 0x ]
_Na: TUB [ full: 60x, active: 30x, empty: 0x ]
_Ca2: TUB [ full: 60x, active: 30x, empty: 0x ]
_SomaRefractory: TUB [ full: 60x, active: 30x, empty: 0x ]
# Behaviour
$: BEHAVIOUR [ behaviour: MAIN-SOMA ]
$: BEHAVIOUR [ behaviour: SOMA_VGSC_H_TUN ]
@@ -31,31 +50,25 @@ SOMA
**Tubs:**
- **VDB**: dendrites deliver current
- **_VDB**: dendrites deliver current
- **Na**: are a proxy for the Coulombs of charge building up on the somatic membrane. They are used to check threshold, but also to mimic Na+ and K+ pumping
- **_Na**: are a proxy for the Coulombs of charge building up on the somatic membrane. They are used to check threshold, but also to mimic Na+ and K+ pumping
- **Ca2+**: Medium term traces to guide tuning and Night development. It is a local trace, ATP is a global (Astrocyte)
- **_Ca2**: Medium term traces to guide tuning and Night development. It is a local trace, ATP is a global (Astrocyte)
- **SpikeTrainTraces**: sono le tracce che consentono al neurone di far partire il Tuning neuronale, quando e' lontano da uno spike-train, ovvero e' in riposo.
- **_SpikeTrainTraces**: sono le tracce che consentono al neurone di far partire il Tuning neuronale, quando e' lontano da uno spike-train, ovvero e' in riposo.
- **SomaRefractory**: tracce di refractory
- **_SomaRefractory**: tracce di refractory
### MAIN-SOMA: Container
```Gen
MAIN-SOMA
type: container
activity_scope: !DAY
type: behaviour
within_scope: !DAY
tub_local:
- VDB
- Na
- Ca2+
- SomaRefractory
tub_intricated:
- SpikeTrainTraces ( contained_in: DAY-N )
```
#### any
@@ -123,7 +136,7 @@ Durante la fase effettiva di spike:
- eliminiamo Na accumulati. Qui ad un RF molto maggiore che con NaSpill. In teoria qui dovremmo eliminare tutti gli Na e NaSpill potrebbe non servire.
- riempiamo SomaRefractory per fase di refractory
- riempiamo Ca2+ per le tracce medio termine di potenziamento/depotenziamento.
- riempiamo _Ca2 per le tracce medio termine di potenziamento/depotenziamento.
```Gen
ActiveAP: ( active: 8x )
@@ -139,8 +152,8 @@ ActiveAP: ( active: 8x )
action: [ increase SomaRefractory ]
trace:
hypothesis: NOT Ca2+ full
action: [ increase Ca2+ ]
hypothesis: NOT _Ca2 full
action: [ increase _Ca2 ]
trace:
```