varie

neuron/neuron-dev.md

@@ -28,10 +28,12 @@ Downregulation:
 - CB1 receptor activation (by eCBs)
 - Retrograde BDNF (brain-derived neurotrophic factor)
 
-> Night Time Scale
-
 ```Gen
-developer: NEURON-DEVELOPER
+
+NEURON-DEV
+
+  type: developer # ??? (container)
+
   contained_by: NEURON
 ```
 
@@ -40,14 +42,13 @@ developer: NEURON-DEVELOPER
 ```Gen
 CA2-PRESYNAPSE-DEV
 
-type: developer
+  type: developer
-
   contained_by: NEURON-DEV
 
-  develops: NEURON/NEURON-DAY/AXON/PRESYNAPSE/tub/Ca2+ # this is the tub whose "full" must be modulated
+  develops: NEURON/NEURON-BEH/AXON/PRESYNAPSE/tub/Ca2+ 
+    # this is the tub whose "full" must be modulated
 
-  tub_dev: 
+  tub_dev: fullMod ( fullness: 100x, active: Ca2+/full, emptiness: 50x ) 
-    - fullMod ( fullness: 100x, active: Ca2+/full, emptiness: 50x ) 
     # qui stiamo modulando il full di Ca2+, associandolo ad
     # active di fullMod. Cambiando active di fullMod, 
     # si cambia la full di Ca2+
@@ -55,39 +56,39 @@ type: developer
   tub_local:
 
   tub_intricated:
-    - Nox ( contained_by: EURON/NEURON-DAY/AXON/PRESYNAPSE )
+    - Nox ( contained_by: NEURON/NEURON-DAY/AXON/PRESYNAPSE )
-    - Ecb ( contained_by: EURON/NEURON-DAY/AXON/PRESYNAPSE )
+    - Ecb ( contained_by: NEURON/NEURON-DAY/AXON/PRESYNAPSE )
 ```
 
-### CheckPreTubCa2+: Contextor
+### CheckPreCa2: Contextor
 
 ***Tens Milliseconds Time Scale***
 
 ```Gen
-CheckPreTubCa2+: ( active: 60x )
+CheckPreCa2: ( active: 60x )
 
   type: contextor
-
   contained_by: NEURON-DEV
+
   in_context: Fixed
 
     condition: ( empty ) 
       out_context: DecreaseCa2Full_ctx
 
-  condition: NOT ( empty ) AND NOT ( Ca2+ full ) 
+    condition: NOT ( empty ) AND NOT ( Ca2+ full ) ???
       out_context: Nothing_ctx
 
     condition: ( full) 
       out_context: IncreaseFull_ctx
 ```
 
-### DecreaseCa2Full: Accumulator
+### DecreasePreCa2Full: Accumulator
 
 ```Gen
-DecreaseCa2Full: ( active: 1x )
+DecreasePreCa2Full: ( active: 1x )
 
   type: accumulator
-  contained_by: DEV-PRE-FULL-CA2+
+  contained_by: NEURON-DEV
 
   in_context: DecreaseCa2Full_ctx
 
@@ -96,103 +97,54 @@ DecreaseCa2Full: ( active: 1x )
       trace: None
 ```
 
-### DEV-PRE-RRP-TUB: Developer
+### IncreasePreCa2Full: Accumulator
 
 ```Gen
-developer: DEV-PRE-RRP-TUB
+IncreasePreCa2Full: ( active: 1x )
- contained_by: DEV-TUB-FLOOR
 
- develops: BEH-PRE/tub/Rrp # this is the tub whose "full" must be modulated
+  type: accumulator
+  contained_by: NEURON-DEV
 
- tub_dev: 
+  in_context: IncreaseCa2Full_ctx
-   - fullMod ( fullness: 100x, active: Rrp/fullness, emptiness: 50x ) # RrpFull "contains" a number of blocks equal to the current Full.
-# qui stiamo modulando la fullness di Rrp, associandola ad
-# active di fullMod. Cambiando active di fullMod, 
-# si cambia la fullness di Rrp
 
- tub_local:
+    hypothesis: NOT ( full ) AND NOT ( empty ) 
-
- tub_intricated:
-  - Nox ( contained_by: BEH-POST )
-  - Ecb ( contained_by: BEH-POST )
-```
-
-#### Context1
-
-#### Episode1
-
-## DEV-TUB-CONCEPTUAL: Developer
-
-Qui la PRE e la POST si predispongono per dare le condizioni a SYN di stabilire o eliminare una sinapsi. Per ora questo comportamento lo mettiamo in TUN perche’ non si tratta di creare o distruggere PRE o POST, ma di rendere disponibile a SYN la possibilita’ di creare o distruggere una SYN. Durante il Day c’e’ il TUN che mette a disposizione, durante il Night SYN crea o distrugge gli accoppiamenti PRE POST.
-
-ATTENZIONE: Questo e POST e’ da cambiare, perche’ c’e’ il passaggio da TubPoss a TubPossSyn a TubAct. E’ la SYN che passa in TubAct.
-
-> Minutes/hours Time Scale
-
-```Gen
-developer: DEV-TUB-CONCEPTUAL
- contained_by: NIGHT-N
-```
-
-### AXO-PRE-TUB-DEV: Developer
-
-Qui stiamo ragionanando sulla trasformazione fra bottone presinaptico inattivo e bottone attivo, pronto a diventare parte di una sinapsi. Il ragionamento e' locale, e mette a disposizione o toglie un bottone attivo che un altro ragionamento, in TUN-WTA, fara' su questo bottone, il bottone postisinaptico e una sinapsi disponibile. Agiamo sulla fullness di BEH-PRE.
-
-```Gen
-developer: AXO-PRE-TUB-DEV
- contained_by: DEV-TUB-CONCEPTUAL
- 
- develops: N/AXO/BEH-AXO/expansion/BEH-PRE
-   # qui stiamo modulando fullness del tub BEH-PRE associandoli a tub_modulation prePos e PreAct. 
-
- tub_modulation:
-  - fulMod ( fullness: 100x, active: BEH-PRE/fullness, empty: 0x )  # aumento di possible di BEH-PRE
-  - actMod ( fullness: None, active: BEH-PRE/active, empty: BEH-PRE/emptiness )  # riferimento a active di BEH-PRE
-
- context_intricated:
-  - TunPossible ( contained_by: TUN-N )
-
- tub_local:
-
- tub_intricated:
-```
-
-#### Context2
-
-```Gen
-context: CheckTunSynAxoPrePossibility
- contained_by: TUN-SYN-AXO-PRE
-
- in_context: TunPossible
- rf: ( active: 60x )
-
- condition:
-  out_context: 
-```
-
-#### Episode2
-
-```Gen
-episode: TunSynAxoPre
-  contained_by: TUN-SYN-AXO-PRE
-
-  in_context: ??
-  rf: 1x
-
-  hypothesis: NOT () AND NOT ()
       action: [ increase,  decrease]
       trace: None
 ```
 
-### DEV-BD-BEH-POST-TUB: Developer
+## RRP-PRESYNAPSE-DEV: Developer
 
 ```Gen
-developer: DEV-BD-BEH-POST-TUB
+RRP-PRESYNAPSE-DEV
 
- contained_by: DEV-TUB-CONCEPTUAL
+  type: developer
-...
+  contained_by: NEURON-DEV
+
+  develops: NEURON/NEURON-BEH/AXO/PRESYNAPSE/tub/Rrp 
+    # this is the tub whose "full" must be modulated
+  
+  tub_dev: fullMod ( fullness: 100x, active: Rrp/fullness, emptiness: 50x ) 
+    # RrpFull "contains" a number of blocks equal to the current Full.
+    # qui stiamo modulando la fullness di Rrp, associandola ad
+    # active di fullMod. Cambiando active di fullMod, 
+    # si cambia la fullness di Rrp
+
+ tub_local:
+
+ tub_intricated:
+  - Nox ( contained_by: NEURON/NEURON-BEH/DENDRITIC-BRANCH/POSTSYNAPSE )
+  - Ecb ( contained_by: NEURON/NEURON-BEH/DENDRITIC-BRANCH/POSTSYNAPSE )
 ```
 
-#### Context3
+### Contextor
 
-#### Episode3
+### Accumulator
+
+## PRESYNAPSE-AXO-DEV: Developer
+
+Qui stiamo ragionanando sull'aggiunta o eliminazione di bottoni presynaptici. Il TUN della PRESYNAPSE e' fatto in WINNERTAKEALL/EXCITATION.
+
+
+## POSTSYNAPSE-DENDRITIC-BRANCH-DEV: Developer
+
+Qui stiamo ragionanando sull'aggiunta o eliminazione di bottoni postsynaptici. Il TUN della POSTSYNAPSE e' fatto in WINNERTAKEALL/EXCITATION.