varie
This commit is contained in:
+117
-101
@@ -9,22 +9,22 @@ Qui comprendiamo:
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- PRESYNAPSE: Presynapse
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- PRESYNAPSE: Presynapse
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- VGCC-PRE: Voltage-Controlled Gated Channels
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- VGCC-PRE: Voltage-Controlled Gated Channels
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## PRESYNAPSE
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## {PRESYNAPSE}
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```Gen
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```Gen
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PRESYNAPSE
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{PRESYNAPSE}
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type: comprehension
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type: comprehension
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expand_comprehension:
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expand_comprehension:
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_VgccPre: VGCC-PRE [ full: 10x, active: 5x, empty: 2x ]
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_VgccPre: {VGCC-PRE} [ full: 10x, active: 5x, empty: 2x ]
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instantiate_container:
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instantiate_container:
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@: $BehaviorPre []
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BEHAVIOR_PRE: CONTAINER []
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@: $TunVgccPre [pass: _VgccPre]
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TUNE_VGCC_PRE: CONTAINER [pass: _VgccPre]
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```
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```
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### $BehaviorPre
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### BEHAVIOR_PRE
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**Tubs:**
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**Tubs:**
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@@ -36,10 +36,10 @@ PRESYNAPSE
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- **_eCB**: retrograde signal updates from postsynapsis (postsynaptic input)
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- **_eCB**: retrograde signal updates from postsynapsis (postsynaptic input)
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```Gen
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```Gen
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$BehaviorPre
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BEHAVIOR_PRE
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type: container
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activity_scope: !DAY
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activity_scope: !DAY
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type: container
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tub_local:
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tub_local:
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_Ca2+: TUB [ full: 60x, active: 30x, empty: 0x ]
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_Ca2+: TUB [ full: 60x, active: 30x, empty: 0x ]
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@@ -58,16 +58,26 @@ $BehaviorPre
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snippets:
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snippets:
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# &AP
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# &AP
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NTreleaseLow: [RF: active 12x, type: accumulator]
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NTreleaseLow: ACCUMULATOR [RF: active 12x]
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NTreleaseMedium [RF active 9x, type: accumulator]
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NTreleaseMedium: ACCUMULATOR [RF active 9x]
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NTreleaseHigh: [RF active 9x, type: accumulator]
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NTreleaseHigh: ACCUMULATOR [RF active 9x]
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Ca2+TracesAccLow: [RF active 3x, type: accumulator]
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Ca2+TracesAccLow: ACCUMULATOR [RF active 3x]
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Ca2+TracesAccMedium: [RF active 6x, type: accumulator]
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Ca2+TracesAccMedium: ACCUMULATOR [RF active 6x]
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Ca2+TracesAccHigh: [RF active 10x, type: accumulator]
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Ca2+TracesAccHigh: ACCUMULATOR [RF active 10x]
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# NOT &AP
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# NOT &AP
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eCBClearence: RF [active: 24x]
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eCBClearenceMedium: ACCUMULATOR [RF: active: 24x]
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eCBClearenceLow: ACCUMULATOR [RF: active: 248x]
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RPShuttleLow: ACCUMULATOR [RF: active: 24x]
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RPShuttleMedium: ACCUMULATOR [RF: active: 48x]
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RefillGlutamine: ACCUMULATOR [RF: active: 24x]
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Ca2+TracesClearance: ACCUMULATOR [RF: active: 30x]
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```
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```
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#### &AP
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#### &AP
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@@ -94,6 +104,7 @@ In tutti i casi di NT
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NTreleaseLow
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NTreleaseLow
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in_context: &AP
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in_context: &AP
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hypothesis: ( _Ca2+ mediumness ) AND ( _Rrp mediumness ) AND NOT( _ATP empty )
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hypothesis: ( _Ca2+ mediumness ) AND ( _Rrp mediumness ) AND NOT( _ATP empty )
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action: [_Rrp decrease, _Nt increase, _ATP decrease]
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action: [_Rrp decrease, _Nt increase, _ATP decrease]
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trace: None
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trace: None
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@@ -104,7 +115,8 @@ NTreleaseLow
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```Gen
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```Gen
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NTreleaseMedium
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NTreleaseMedium
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in_context: AP_ctx
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in_context: &AP
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hypothesis: (( Ca2+ fullness ) AND ( Rrp mediumness ) OR
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hypothesis: (( Ca2+ fullness ) AND ( Rrp mediumness ) OR
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( Ca2+ mediumness ) AND ( Rrp fullness )) AND
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( Ca2+ mediumness ) AND ( Rrp fullness )) AND
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NOT( ATP empty )
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NOT( ATP empty )
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@@ -117,7 +129,8 @@ NTreleaseMedium
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```Gen
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```Gen
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NTreleaseHigh
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NTreleaseHigh
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in_context: AP_ctx
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in_context: &AP
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hypothesis: ( Ca2+ fullness ) AND ( Rrp fullness ) AND
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hypothesis: ( Ca2+ fullness ) AND ( Rrp fullness ) AND
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NOT( ATP empty )
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NOT( ATP empty )
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action: [Rrp decrease, NT increase, ATP decrease]
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action: [Rrp decrease, NT increase, ATP decrease]
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@@ -130,16 +143,17 @@ Serve a:
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- fare il tuning dei VGCC
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- fare il tuning dei VGCC
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- dare la velocita' al trasporto di vesicles da RP a RRP, anche se non avendo ancora compreso ATP, la velocita' non cambia molto la sostanza.
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- dare la velocita' al trasporto di vesicles da RP a RRP, anche se non avendo ancora compreso ATP, la velocita' non cambia molto la sostanza.
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- le tracce vengono eliminate quando il neurone e' in pausa, lontano da uno spike train, TunPossible_ctx
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- le tracce vengono eliminate quando il neurone e' in pausa, lontano da uno spike train, &TunePossible
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- Abbiamo 3 tracce, high, medium and low. Andiamo a verificare una combinazione di queste per fare la modulazione
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- Abbiamo 3 tracce, high, medium and low. Andiamo a verificare una combinazione di queste per fare la modulazione
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- RF e' a 10, questo dovrebbe essere un RF di campionamento durante AP_ctx context che dovremmo assicurarci sia tipo 100. Il che implicherebbe 10 campionamenti.
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- RF e' a 10, questo dovrebbe essere un RF di campionamento durante &AP context che dovremmo assicurarci sia tipo 100. Il che implicherebbe 10 campionamenti.
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- The biological meaning is that a synapse that has just been through a burst is primed for fast recovery — the molecular machinery for vesicle docking is already engaged, calcium-dependent priming factors are still elevated, and the system is in a ready state. A synapse that has been silent for several seconds has cooled down and replenishes slowly.
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- The biological meaning is that a synapse that has just been through a burst is primed for fast recovery — the molecular machinery for vesicle docking is already engaged, calcium-dependent priming factors are still elevated, and the system is in a ready state. A synapse that has been silent for several seconds has cooled down and replenishes slowly.
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- So after one second of silence CaTrace has fallen to ~37% of its peak value, after two seconds to ~14%, after three seconds to ~5%. It asymptotes toward zero but never exactly reaches it. Between spikes, Ca2+ falls toward zero as the pumps clear it. The result is that CaTrace encodes not the instantaneous calcium level but the recent history of calcium activity — a smoothed, time-averaged measure of how active the synapse has been over the past one to two seconds.
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- So after one second of silence CaTrace has fallen to ~37% of its peak value, after two seconds to ~14%, after three seconds to ~5%. It asymptotes toward zero but never exactly reaches it. Between spikes, Ca2+ falls toward zero as the pumps clear it. The result is that CaTrace encodes not the instantaneous calcium level but the recent history of calcium activity — a smoothed, time-averaged measure of how active the synapse has been over the past one to two seconds.
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```Gen
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```Gen
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Ca2+TracesAccuLow
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Ca2+TracesAccuLow
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in_context: AP_ctx
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in_context: &AP
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hypothesis: (Ca2+ emptiness)
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hypothesis: (Ca2+ emptiness)
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action: [CaTraceLow increase]
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action: [CaTraceLow increase]
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trace: None
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trace: None
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@@ -150,7 +164,8 @@ Ca2+TracesAccuLow
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```Gen
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```Gen
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Ca2+TracesAccMedium
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Ca2+TracesAccMedium
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in_context: AP_ctx
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in_context: &AP
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hypothesis: (Ca2+ mediumness)
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hypothesis: (Ca2+ mediumness)
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action: [CaTraceMed increase]
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action: [CaTraceMed increase]
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trace: None
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trace: None
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@@ -161,7 +176,8 @@ Ca2+TracesAccMedium
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```Gen
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```Gen
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Ca2+TracesAccumulationHigh
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Ca2+TracesAccumulationHigh
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in_context: AP_ctx
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in_context: &AP
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hypothesis: (Ca2+ fullness)
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hypothesis: (Ca2+ fullness)
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action: [CaTraceHigh increase]
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action: [CaTraceHigh increase]
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trace: None
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trace: None
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@@ -169,26 +185,23 @@ Ca2+TracesAccumulationHigh
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#### NOT &AP
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#### NOT &AP
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##### eCB clearance: accumulator
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##### eCBClearance
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eCB dipende da POST. Tende a modulare l'entrata di Ca2+ degli VGCC.
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eCB dipende da POST. Tende a modulare l'entrata di Ca2+ degli VGCC.
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Qui non facciamo un flush di eCB, riduciamo ogni mezzo secondo (context) di un RF di questo episodio.
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Qui non facciamo un flush di eCB, riduciamo ogni mezzo secondo (context) di un RF di questo episodio.
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##### eCBClearance: ( active: 24x ) accumulator
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```Gen
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```Gen
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eCBClearance: ( active: 24x ) # Slow
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eCBClearance: ( active: 24x ) # Slow
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type: accumulator
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contained_by: PRESYNAPSE-BEH
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in_context: NOT AP_ctx
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in_context: NOT &AP
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hypothesis: NOT (eCB empty)
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hypothesis: NOT (eCB empty)
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action: [eCB decrease]
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action: [eCB decrease]
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trace: None
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trace: None
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```
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```
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##### RPShuttleLow: ( active: 48x ) accumulator
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##### RPShuttleLow
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This happens in the seconds loop, once per second.
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This happens in the seconds loop, once per second.
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@@ -197,11 +210,10 @@ The "Hard Bottleneck" State. Recruitment is throttled by a lack of signal, a lac
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Rate: 0.00 – 0.25
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Rate: 0.00 – 0.25
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```Gen
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```Gen
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RPShuttleLow: ( active: 48x ) # Low
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RPShuttleLow
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type: accumulator
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contained_by: PRESYNAPSE-BEH
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in_context: NOT &AP
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in_context: NOT AP_ctx
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hypothesis: (CaTraceLow fullness) OR
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hypothesis: (CaTraceLow fullness) OR
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(RP emptiness) OR
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(RP emptiness) OR
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(RRP fullness)
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(RRP fullness)
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@@ -209,18 +221,17 @@ RPShuttleLow: ( active: 48x ) # Low
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trace: None
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trace: None
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```
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```
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##### RPShuttleMedium: ( active: 24x ) accumulator
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##### RPShuttleMedium
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The "Sub-Optimal" State. The machinery is working, but it's held back by partial limitations. This covers cases where the signal is steady but the "piston" isn't firing at full speed, or where a high vacancy in the RRP (emptiness) forces a low signal to work a bit harder.
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The "Sub-Optimal" State. The machinery is working, but it's held back by partial limitations. This covers cases where the signal is steady but the "piston" isn't firing at full speed, or where a high vacancy in the RRP (emptiness) forces a low signal to work a bit harder.
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Rate: 0.50 – 0.97
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Rate: 0.50 – 0.97
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```Gen
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```Gen
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RPShuttleMedium: ( active: 24x ) # Medium
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RPShuttleMedium
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type: accumulator
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contained_by: PRESYNAPSE-BEH
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in_context: &AP
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in_context: AP_ctx
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hypothesis: (CaTraceMedium fullness) AND (RP mediumness) AND (RRP mediumness) OR
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hypothesis: (CaTraceMedium fullness) AND (RP mediumness) AND (RRP mediumness) OR
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(CaTraceHigh fullness) AND (RP mediumness) AND (RRP mediumness) OR # signal boost
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(CaTraceHigh fullness) AND (RP mediumness) AND (RRP mediumness) OR # signal boost
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(CaTraceMedium fullness) AND (RP fullness) AND (RRP mediumness) OR # supply boost
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(CaTraceMedium fullness) AND (RP fullness) AND (RRP mediumness) OR # supply boost
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@@ -229,18 +240,17 @@ RPShuttleMedium: ( active: 24x ) # Medium
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trace: None
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trace: None
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```
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```
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##### RPShuttleHigh: ( active: 12x ) accumulator
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##### RPShuttleHigh
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|
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The "High Performance" State. Multiple systems are optimized, but one is still at a "mediumness" level. This represents an active synapse that hasn't reached its absolute peak because either the supply is only 50% or the RRP isn't empty enough to create that "maximal vacuum" pull.
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The "High Performance" State. Multiple systems are optimized, but one is still at a "mediumness" level. This represents an active synapse that hasn't reached its absolute peak because either the supply is only 50% or the RRP isn't empty enough to create that "maximal vacuum" pull.
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Rate: 1.25 – 1.94
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Rate: 1.25 – 1.94
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|
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```Gen
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```Gen
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RPShuttleHigh: ( active: 12x ) # Fast
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RPShuttleHigh
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type: accumulator
|
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contained_by: PRESYNAPSE-BEH
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in_context: &AP
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|
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in_context: AP_ctx
|
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hypothesis: (CaTraceHigh fullness) AND (RP fullness) AND (RRP mediumness) OR # signal + supply
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hypothesis: (CaTraceHigh fullness) AND (RP fullness) AND (RRP mediumness) OR # signal + supply
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(CaTraceHigh fullness) AND (RP mediumness) AND (RRP emptiness) OR # signal + vacancy
|
(CaTraceHigh fullness) AND (RP mediumness) AND (RRP emptiness) OR # signal + vacancy
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(CaTraceMedium fullness) AND (RP fullness) AND (RRP emptiness) # supply + vacancy
|
(CaTraceMedium fullness) AND (RP fullness) AND (RRP emptiness) # supply + vacancy
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@@ -248,7 +258,7 @@ RPShuttleHigh: ( active: 12x ) # Fast
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trace: None
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trace: None
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```
|
```
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|
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##### RefillRPGlutamine: accumulator
|
##### RefillRPGlutamine
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|
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This happens in the minutes loop, once per minute, via the glutamine shuttle from the astrocyte. It is a two-step process across two cells.
|
This happens in the minutes loop, once per minute, via the glutamine shuttle from the astrocyte. It is a two-step process across two cells.
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||||||
|
|
||||||
@@ -278,16 +288,15 @@ Gln — depletes over bursts, refilled by glucose (slowest, astrocyte-depend
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|||||||
|
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Each tier buys time for the one below it to respond. When all three are depleted simultaneously — which only happens under prolonged high-frequency firing with insufficient glucose — the synapse has no remaining buffer and goes silent until the minutes loop restores the Glutamine_pool.
|
Each tier buys time for the one below it to respond. When all three are depleted simultaneously — which only happens under prolonged high-frequency firing with insufficient glucose — the synapse has no remaining buffer and goes silent until the minutes loop restores the Glutamine_pool.
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||||||
|
|
||||||
##### Ca2+TracesClearance: ( active: 30x ) accumulator
|
##### Ca2+TracesClearance
|
||||||
|
|
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Qui facciamo un flush di CaTraceX. Deve essere fatto a valle del tuning.
|
Qui facciamo un flush di CaTraceX. Deve essere fatto a valle del tuning.
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
Ca2+TracesClearance: ( active: 30x ) # Slow
|
Ca2+TracesClearance
|
||||||
type: accumulator
|
|
||||||
contained_by: PRESYNAPSE-BHE
|
in_context: NOT &TunePossible
|
||||||
|
|
||||||
in_context: NOT TunPossible_ctx
|
|
||||||
hypothesis: NOT (CaTraceHigh empty)
|
hypothesis: NOT (CaTraceHigh empty)
|
||||||
action: [CaTRaceHigh decrease]
|
action: [CaTRaceHigh decrease]
|
||||||
trace: None
|
trace: None
|
||||||
@@ -301,41 +310,45 @@ Ca2+TracesClearance: ( active: 30x ) # Slow
|
|||||||
trace: None
|
trace: None
|
||||||
```
|
```
|
||||||
|
|
||||||
### VGCC-PRE-TUN: Container
|
### TUNE_VGCC_PRE
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
|
|
||||||
VGCC-PRE-TUN
|
TUNE_VGCC_PRE
|
||||||
# qui stiamo aggiungendo o eliminando VGCC-PRE. Fra un massimo full e minimo empty (empty puo' non essere 0)
|
# qui stiamo aggiungendo o eliminando VGCC-PRE. Fra un massimo full e minimo empty (empty puo' non essere 0)
|
||||||
# contained_by: PRESYNAPSE non e' contenuto, si attacca.
|
# contained_by: PRESYNAPSE non e' contenuto, si attacca.
|
||||||
|
|
||||||
type: container
|
|
||||||
activity_scope: !DAY
|
activity_scope: !DAY
|
||||||
|
type: container
|
||||||
|
|
||||||
context_intricated:
|
context_intricated:
|
||||||
- TunPossible_ctx ( contained_by: DAY-N )
|
- &TunePossible ( contained_by: DAY-N )
|
||||||
|
|
||||||
tub_passed:
|
tub_passed:
|
||||||
VGCC-PRE_ALL: pass.VGCC-PRE_ALL
|
_VgccPre: pass._VgccPre
|
||||||
|
|
||||||
tub_local:
|
tub_local:
|
||||||
|
|
||||||
tub_intricated:
|
tub_intricated:
|
||||||
|
|
||||||
|
snippets:
|
||||||
|
|
||||||
|
CheckVgccPreTun: CONTEXTOR [RF: active 60x]
|
||||||
|
PossibleUpPreVgccTun: ACCUMULATOR [RF:active 10x]
|
||||||
|
PossibleDownPreVgccTun: ACCUMULATOR [RF:active 10x]
|
||||||
```
|
```
|
||||||
|
|
||||||
#### TunPossible_ctx
|
#### &TunePossible
|
||||||
|
|
||||||
##### CheckVgccPreTun: ( active: 60x ) contexting
|
##### CheckVgccPreTun
|
||||||
|
|
||||||
Qui controlliamo che ci siano le condizioni per aumentare o diminuire la quantita' di VGCC
|
Qui controlliamo che ci siano le condizioni per aumentare o diminuire la quantita' di VGCC
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
CheckVgccPreTun: ( active: 60x )
|
CheckVgccPreTun
|
||||||
type: contexting
|
|
||||||
contained_by: VGCC-PRE-TUN
|
in_context: &TunePossible
|
||||||
|
|
||||||
in_context: TunPossible_ctx
|
|
||||||
condition: ( CaTraceHigh fullness )
|
condition: ( CaTraceHigh fullness )
|
||||||
out_context: TryTunUpPreVcgg_ctx
|
out_context: TryTunUpPreVcgg_ctx
|
||||||
|
|
||||||
@@ -343,14 +356,13 @@ CheckVgccPreTun: ( active: 60x )
|
|||||||
out_context: TryTunDownPreVcgg_ctx
|
out_context: TryTunDownPreVcgg_ctx
|
||||||
```
|
```
|
||||||
|
|
||||||
##### PossibleUpPreVgccTun: ( active: 10x ) accumulator
|
##### PossibleUpPreVgccTun
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
PossibleUpPreVgccTun: ( active: 10x )
|
PossibleUpPreVgccTun
|
||||||
type: accumulator
|
|
||||||
contained_by: VGCC-PRE-TUN
|
|
||||||
|
|
||||||
in_context: TryTunUpPreVcgg_ctx
|
in_context: TryTunUpPreVcgg_ctx
|
||||||
|
|
||||||
hypothesis:
|
hypothesis:
|
||||||
action:
|
action:
|
||||||
trace:
|
trace:
|
||||||
@@ -359,37 +371,36 @@ PossibleUpPreVgccTun: ( active: 10x )
|
|||||||
##### PossibleDownPreVgccTun: ( active: 10x ) accumulator
|
##### PossibleDownPreVgccTun: ( active: 10x ) accumulator
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
PossibleDownPreVgccTun: ( active: 10x )
|
PossibleDownPreVgccTun
|
||||||
type: accumulator
|
|
||||||
contained_by: VGCC-PRE-TUN
|
|
||||||
|
|
||||||
in_context: TryTunDownPreVcgg_ctx
|
in_context: TryTunDownPreVcgg_ctx
|
||||||
|
|
||||||
hypothesis:
|
hypothesis:
|
||||||
action:
|
action:
|
||||||
trace:
|
trace:
|
||||||
```
|
```
|
||||||
|
|
||||||
## VGCC-PRE: Comprehension
|
## {VGCC-PRE}
|
||||||
|
|
||||||
Voltage-Controlled Gated Channels: Qui per ora non gestiamo l'evoluzione della depolarizzazione. Alla scomparsa dell'AP, i VGCC smettono di funzionare.
|
Voltage-Controlled Gated Channels: Qui per ora non gestiamo l'evoluzione della depolarizzazione. Alla scomparsa dell'AP, i VGCC smettono di funzionare.
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
VGCC-PRE
|
{VGCC-PRE}
|
||||||
type: comprehension
|
type: comprehension
|
||||||
|
|
||||||
instantiate_container:
|
instantiate_container:
|
||||||
VGCC-PRE-BEH []
|
BEHAVIOR_VGCC_PRE: CONTAINER []
|
||||||
```
|
```
|
||||||
|
|
||||||
### VGCC-PRE-BEH: Container
|
### BEHAVIOR_VGCC_PRE
|
||||||
|
|
||||||
Voltage-Controlled Gated Channels: Qui per ora non gestiamo l'evoluzione della depolarizzazione. Alla scomparsa dell'AP, i VGCC smettono di funzionare.
|
Voltage-Controlled Gated Channels: Qui per ora non gestiamo l'evoluzione della depolarizzazione. Alla scomparsa dell'AP, i VGCC smettono di funzionare.
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
VGCC-PRE-PRE
|
BEHAVIOR_VGCC_PRE
|
||||||
|
|
||||||
type: container
|
|
||||||
activity_scope: !DAY
|
activity_scope: !DAY
|
||||||
|
type: container
|
||||||
|
|
||||||
tub_intricated:
|
tub_intricated:
|
||||||
- Ca2+ ( contained_by: PRESYNAPSE-BHE )
|
- Ca2+ ( contained_by: PRESYNAPSE-BHE )
|
||||||
@@ -397,9 +408,19 @@ VGCC-PRE-PRE
|
|||||||
|
|
||||||
context_intricated:
|
context_intricated:
|
||||||
- AP ( contained_by: SOMA )
|
- AP ( contained_by: SOMA )
|
||||||
|
|
||||||
|
snippets:
|
||||||
|
|
||||||
|
Ca2+enterLow: ACCUMULATOR [RF: active 12x]
|
||||||
|
Ca2+enterMedium: ACCUMULATOR [RF: active 6x]
|
||||||
|
Ca2+enterHigh: ACCUMULATOR [RF: active 3x]
|
||||||
|
|
||||||
|
Ca2+ClearanceLow: ACCUMULATOR [RF: active 24x]
|
||||||
|
Ca2+ClearanceHigh: ACCUMULATOR [RF: active 4x]
|
||||||
|
|
||||||
```
|
```
|
||||||
|
|
||||||
#### AP_ctx
|
#### &AP
|
||||||
|
|
||||||
Da rivedere le condizioni per aggiungere mGluR che ha come proxy NT concentration!!!!!
|
Da rivedere le condizioni per aggiungere mGluR che ha come proxy NT concentration!!!!!
|
||||||
|
|
||||||
@@ -421,27 +442,25 @@ Qui semplifichiamo:
|
|||||||
|
|
||||||
Devo controllare che le condizioni sotto siano esaustive. Qui ho confuso high con low, e inoltre ho messo NT per mGluR che devo controllare che abbia senso.
|
Devo controllare che le condizioni sotto siano esaustive. Qui ho confuso high con low, e inoltre ho messo NT per mGluR che devo controllare che abbia senso.
|
||||||
|
|
||||||
##### Ca2+enterLow: ( active: 12x ) accumulator
|
##### Ca2+enterLow
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
Ca2+enterLow: ( active: 12x ) # Low
|
Ca2+enterLow
|
||||||
type: accumulator
|
|
||||||
contained_by: VGCC-PRE-BEH
|
in_context: &AP
|
||||||
|
|
||||||
in_context: AP_ctx
|
|
||||||
hypothesis: (Ca2+ empty) AND (eCB empty)
|
hypothesis: (Ca2+ empty) AND (eCB empty)
|
||||||
action: [Ca2+ increase, ATP decrease]
|
action: [Ca2+ increase, ATP decrease]
|
||||||
trace: None
|
trace: None
|
||||||
```
|
```
|
||||||
|
|
||||||
##### Ca2+enterMedium: ( active: 6x ) accumulator
|
##### Ca2+enterMedium
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
Ca2+enterMedium: ( active: 6x ) # Medium
|
Ca2+enterMedium
|
||||||
type: accumulator
|
|
||||||
contained_by: VGCC-PRE-BEH
|
in_context: &AP
|
||||||
|
|
||||||
in_context: AP_ctx
|
|
||||||
hypothesis: (Ca2+ mediumness) OR
|
hypothesis: (Ca2+ mediumness) OR
|
||||||
((eCB mediumness) AND (Ca2+ empty)) OR
|
((eCB mediumness) AND (Ca2+ empty)) OR
|
||||||
((eCB full) AND (Ca2+ empty) AND (NT empty))
|
((eCB full) AND (Ca2+ empty) AND (NT empty))
|
||||||
@@ -449,23 +468,22 @@ Ca2+enterMedium: ( active: 6x ) # Medium
|
|||||||
trace: None
|
trace: None
|
||||||
```
|
```
|
||||||
|
|
||||||
##### Ca2+enterHigh: ( active: 3x ) accumulator
|
##### Ca2+enterHigh
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
Ca2+enterHigh: ( active: 3x ) # High
|
Ca2+enterHigh
|
||||||
type: accumulator
|
|
||||||
contained_by: VGCC-PRE-BEH
|
in_context: &AP
|
||||||
|
|
||||||
in_context: AP_ctx
|
|
||||||
hypothesis: (Ca2+ mediumness) AND (eCB full) OR
|
hypothesis: (Ca2+ mediumness) AND (eCB full) OR
|
||||||
(eCB mediumness)
|
(eCB mediumness)
|
||||||
action: [Ca2+ increase, ATP decrease]
|
action: [Ca2+ increase, ATP decrease]
|
||||||
trace: None
|
trace: None
|
||||||
```
|
```
|
||||||
|
|
||||||
#### NOT AP_ctx
|
#### NOT &AP
|
||||||
|
|
||||||
Qui eliminiamo Ca2+. Il tempo che ci mette ad eliminare il Ca2+ dovrebbe essere minoe dell'inervallo fra un AP_ctx e un'altra. Siccome non comprendiamo per ora ATP, non c'e' accumulo di Ca2+ per mancanza di ATP (stanchezza).
|
Qui eliminiamo Ca2+. Il tempo che ci mette ad eliminare il Ca2+ dovrebbe essere minoe dell'inervallo fra un &AP e un'altra. Siccome non comprendiamo per ora ATP, non c'e' accumulo di Ca2+ per mancanza di ATP (stanchezza).
|
||||||
|
|
||||||
Non non comprendiamo anche il ristabilimento del Voltage, con altri Ioni entranti e uscenti, per ora tutto dipende da AP del SOMA. Non comprendiamo per ora:
|
Non non comprendiamo anche il ristabilimento del Voltage, con altri Ioni entranti e uscenti, per ora tutto dipende da AP del SOMA. Non comprendiamo per ora:
|
||||||
|
|
||||||
@@ -479,27 +497,25 @@ Qui disinguiamo:
|
|||||||
- NOT ca2+ fullness che svuota piu' lentamente
|
- NOT ca2+ fullness che svuota piu' lentamente
|
||||||
- da capire se serve veramente questa distinzione per il tempo di svuotamento.
|
- da capire se serve veramente questa distinzione per il tempo di svuotamento.
|
||||||
|
|
||||||
##### Ca2+ClearanceLow: ( active: 24x ) accumulator
|
##### Ca2+ClearanceLow
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
Ca2+ClearanceLow: ( active: 24x ) # Low
|
Ca2+ClearanceLow
|
||||||
type: accumulator
|
|
||||||
contained_by: VGCC-PRE-BEH
|
in_context: NOT &AP
|
||||||
|
|
||||||
in_context: NOT AP_ctx
|
|
||||||
hypothesis: (NOT Ca2+ fullness) AND (NOT Ca2+ empty)
|
hypothesis: (NOT Ca2+ fullness) AND (NOT Ca2+ empty)
|
||||||
action: [Ca2+ decrease]
|
action: [Ca2+ decrease]
|
||||||
trace: None
|
trace: None
|
||||||
```
|
```
|
||||||
|
|
||||||
##### Ca2+ClearanceHigh: ( active: 4x ) accumulator
|
##### Ca2+ClearanceHigh
|
||||||
|
|
||||||
```Gen
|
```Gen
|
||||||
Ca2+ClearanceHigh: ( active: 4x ) # High
|
Ca2+ClearanceHigh
|
||||||
type: accumulator
|
|
||||||
contained_by: VGCC-PRE-BEH
|
in_context: NOT &AP
|
||||||
|
|
||||||
in_context: NOT AP_ctx
|
|
||||||
hypothesis: NOT (Ca2+ empty)
|
hypothesis: NOT (Ca2+ empty)
|
||||||
action: [Ca2+ decrease]
|
action: [Ca2+ decrease]
|
||||||
trace: None
|
trace: None
|
||||||
|
|||||||
Reference in New Issue
Block a user