diff --git a/neuron/soma.md b/neuron/soma.md index e66445f..7a4e703 100644 --- a/neuron/soma.md +++ b/neuron/soma.md @@ -39,12 +39,12 @@ Qui comprendiamo: — ms: - based on VDB, VGSC open and let Na+ in. VGSG then go into refractory -- if Na fullness then AP. Here the threshold is based only on the integration of Na+ +- if Na fullness then ApCtx. Here the threshold is based only on the integration of Na+ - increase SpikeTrainTraces (fast at spike) - increase Ca2+ traces - decrease Na: fast pump which decreases Na+, we do not model K+ -- there is a tug of war between Na entering and exiting. Na can reach fullness only if VDB increases fast (derivative) -- there are 2 context: AP and RefractorySoma imlemented with timers and tunable +- there are 2 context: ApCtx and RefractorySoma imlemented with timers and tunable - decrease SpikeTraintraces slow, only if away from spiketrain this is empty - Tune: @@ -67,10 +67,6 @@ Qui comprendiamo: - **Na**: are a proxy for the Coulombs of charge building up on the somatic membrane. They are used to check threshold, but also to mimic Na+ and K+ pumping -- **AP**: - -- **bAP**: - - **Ca2+**: Medium term traces to guide tuning and Night development. It is a local trace, ATP is a global (Astrocyte) - **SpikeTrainTraces**: sono le tracce che consentono al neurone di far partire il Tuning neuronale, quando e' lontano da uno spike-train, ovvero e' in riposo. @@ -105,43 +101,43 @@ container: SOMA ### ms: SOMA -#### CheckVDB: Interacting +#### CheckVDB: Episode As dendrites deliver current (VDB​), the soma acts like a capacitor. It "stores" this charge in the form of membrane potential. This contextualizes VGSC-SOMA to open ion channels that let Na+ ions in. -This only applies if not AP, or in other words, SOMA is not in refractory period. +This only applies if not ApCtx, or in other words, SOMA is not in refractory period. ```Gen -interacting: CheckVDB +episode: CheckVDB contained_by: SOMA context: Fixed rf: ( active: 60x ) - condition: (VDB fullness ) AND NOT AP + condition: (VDB fullness ) AND NOT ApCtx out_context: VDBMax - condition: ( VDB mediumness ) AND NOT AP + condition: ( VDB mediumness ) AND NOT ApCtx out_context: VDBMedium - condition: ( VDB emptiness ) AND NOT AP + condition: ( VDB emptiness ) AND NOT ApCtx out_context: VDBLow ``` -#### CheckSomaSpike: Interacting +#### SomaSpike: Episode Qui siamo nella fase effettiva di spike, non refractory che viene dopo. Fa da contesto di durata fra un RF ed un altro. ```Gen -interacting: CheckSomaSpike +episode: SomaSpike contained_by: SOMA context: Fixed rf: ( active: 60x ) condition: ( Na fullness ) AND ( NOT SomaRefractory ) - out_context: AP - out_context: bAP + out_context: ApCtx + out_context: bApCtx ``` #### APInteracting: Interacting @@ -152,7 +148,7 @@ Durante la fase effettiva di spike, eliminiamo Na accumulati e riempiamo per fas interacting: APInteracting contained_by: SOMA - context: AP + context: ApCtx rf: ( active: 8x ) hypothesis: NOT Na empty @@ -200,10 +196,10 @@ tuner: VGSC-SOMA-TUN tub_intricated: ``` -##### Check: Context +##### Check: Episode ```Gen -context: Check +context: episode contained_by: VGSC-SOMA-TUN context: TunPossible @@ -259,12 +255,12 @@ interacting: NaEnterH trace: None ``` -##### CheckRefractoryH: Context +##### CheckRefractoryH: Episode Il check su refractory deve essere fatto ad un RF maggiore della eliminazione di Refractory. Questo perche' e' un era nella qualle avviene l'episodio. ```Gen -context: CheckRefractoryH +episode: CheckRefractoryH contained_by: VGSC-H-SOMA context: NOT RefractoryH